Started upgrading from v8 to v9. First it says "Upgrade Enterprise Manager". This failed with a generic error message - opened case 01647842.
Then I found my existing v8 backups were failing, of multiple 2012R2 and 2008R2 VMs. Rebooted everything - no joy. Bunch of recent MS updates to deploy - did so. No change.
It now being mid evening ie out of hours, and not expecting a further response from Veeam till morning, based on past interactions with Veeam software and Veeam support, I decided to simplify things - uninstall VeeamONE v9 which I had installed some days previously (all backups had run OK thereafter, but still ...); and remove Enterprise Manager v8 which I had installed moons ago and never used. Ripped all that out, no problems. Rebooted. Ran v9 upgrade which this time upgraded B&R without asking to upgrade Enterprise Manager first. Then installed Ent Mgr v9. Ran Ent Mgr, seemed fine. Ran B&R, told me it needed to update VMs etc - which it did without error.
So that looked like progress. Confusion resolved, I guessed.
Wrong. I ran a backup - boom! All VMs being backed *rebooted* - one DC on 2012R2 and one Exchange on 2008R2 on one host, plus the Veeam backup server VM itself on 2012R2 itself on a different host. Argh!
Set up new backup job of source VM which hadn't been touched by Veeam before - ran Active Full - boom! - source VM rebooted.
I suspect Veeam Tech's advice will be "rip it up and start again" but I decided to post here meantime, in case (a) anyone has already come across a similar scenario or (b) anyone comes across upgrade failure in future, and maybe this message/thread will suggest to them that they do *not* plough on

Regards
W