OK, so I'll add a bit more info for clarity.
The copy job is set to run once per day at 6AM, after my normal backups are complete.
It is targeted at a scale-out repository with Per VM files enabled.
Now I found this: "Transform phase — copy jobs are by nature running in "forever forward incremental" mode, and performs transform operations on the target backup repository accordingly. Additionally, it is possible to schedule health checks or backup file compacting as described in the Backup Job section. The transform phase begins when all VMs are successfully copied to the target, or if the synchronization interval expires." http://bp.veeam.expert/job_configuratio ... y_job.html
Not all VMs in the Copy Job are successful, as some are only backed up Weekly or Bi-Weekly. So could this be causing the Transform stage to not happen on those VMs that are successful?
T-SQL-01Warning6:16:11 AM6:04:37 AM (+1)0.0 KB0.0 KB0.0 KB (1x)0:00:00 Initial copy did not complete, and will resume on the next copy interval