The production host has a continues protection and replicates all of its data to the failback host in a infinitive loop. If the Production hosts stops working we can simply fail over to the failback host and the users won't notice any delays (besides the short downtime). Besides the replication we are also doing backups to rotating harddrives.
So, yesterday I was doing maintenance on one of our servers, I've disabled the veeam jobs and updated ESXi on the failback host, that went fine. So I went on to the production host, shutdown the running VM's and updated ESXi. All went fine. It might have been that it was getting late (or that I had a beer

To any possible replication issues and unwanted dataloss, i've caried out the following steps to get the replica server back to normal
- Shutdown the accidentally powered on VM's
- Removed all snapshots on the replica
- Deleted the replication data from \\server\share\Replicas\jobname*random chars*\
- Deleted the existing replica information from the configuration from the veeam console
- Mapped the replica's back to the job and set the seeds
- Initiated a new replica
The running veeam job just recalculated the disk digests of the replica's and both where in sync again.
So my thoughts where better safe then sorry.

The question is: If I have a replication job for a simple fileserver and I boot up the replica while the production server is still running, I starting to change or delete files, then shutdown the replica again. and initiate a replication job. Does veeam know that the replica has been changed and will it correct it or does it ignore changes made to the replica?
Thanks!
ps. I'm running the latest version of Veeam (9.5u1)